On 23/11/10 17:00, Mark Abraham wrote:
If you want a movie, then there I seem to recall that there is a VMD
option to generate bonds for each frame, and not to use those from the
first frame. Ask their mailing list. Such bonds will not traverse the
PBC, obviously.
Just for the record: It seems that typing "mol bondsrecalc all" at the
VMD Tk console and refreshing the visualization works to "sanitize" a frame.
thanks!
m.
--
Massimo Sandal, Ph.D.
http://devicerandom.org
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