Hi,
The benchmarks are infinite runs (nsteps=-1). Try adding the -maxh
option to mdrun to limit the execution time.
Rossen
On 11/23/10 9:48 AM, kapil mathur wrote:
Dear All,
I have some queries regarding the benchmarking result of mdrun-gpu :
1. I have run mdrun-gpu with dhfr-impl-1nm.bench on tesla-c1060 , can
you provide me the details regarding the execution time it takes as in
my case it is running from a very long time (4-5 hours) .
2. Similar things are happening for Gromacs-MPI also.
I am running it as follows :
GPU:
mdrun-gpu -device
"OpenMM:platform=Cuda,memtest=15,deviceid=0,force-device=no" -s
topol.tpr (dhfr-impl-1nm.bench)
CPU(Cluster):
mpirun -np 4 mdrun -s topol.tpr (dhfr-impl-1nm.bench)
Thanking you in advance
--
Kapil Mathur
HPC Solutions Group
C-DAC, Pune
Phone: +91-20-25704309
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