On 22/11/10 11:09, mohsen ramezanpour wrote:
Dear All
I am searching for a tutorial for learning how to do protein folding with
Gromacs.
Do any one know such tutorials?
Please let me know them.
I don't think so because managing to fold a protein in a MD simulation
is no easy task. In theory, if you have a lot of patience and a lot of
computational resources, it's no different from a normal MD simulation,
but good luck even getting *close* to a folded state.
So, it all depends on what you want really to know, and in this case
several techniques may help you (REMD, metadynamics, etc.) but I think
you have to read a lot of literature to make up your mind on such stuff.
M.
Thanks in advance
Sincerely
Mohsen
--
Massimo Sandal, Ph.D.
http://devicerandom.org
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