On 13/11/2010 1:21 AM, babu gokul wrote:
Dear all
I would like to analysis the hydration site near the proteins the one done by
the following paper
"Biophysical Journal Volume 79 December 2000 2966–2974"
I would like to do the analysis the trajectory like this. is there any tool
available in gromacs to do this kind of analysis could anyone
help me in this regard. what tool will be useful to analysis this kind of
results.
It sounds rather like you're not doing enough of your own work to "earn"
help. :-) It would take someone several minutes to track down that paper
from the information you provided, when providing a URL to the paper
would have been easy and considerate. Then they'd have to spend some
more time reading parts of it to try and work out what analysis you are
talking about, in the hope that it's clear which one you are talking
about. Surely the method description they provided talks enough about
the geometric primitives that you can provide a quick summary of the
requirements with a precise and easy pointer to further information once
you've piqued someone's interest.
This may sound like a lot of work for you, but see
http://www.catb.org/%7Eesr/faqs/smart-questions.html
Mark
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