Hi, Please tell me which step is wrong:(
1.step-r...@ab-desktop:/home/ab/Desktop# tar xvzf dsspcmbi.tar.gz 2.step-r...@ab-desktop:/home/ab/Desktop/dssp# cp dsspcmbi dssp 3.step-r...@ab-desktop:/home/ab/Desktop/dssp# mv dssp /usr/local/bin 4.step-r...@ab-desktop:/home/ab/Desktop/dssp# export DSSP=/usr/local/bin 5.step...@ab-desktop:~/Desktop/gromacswork$ do_dssp -s run.tpr -f run.xtc Program do_dssp, VERSION 4.0.5 Source code file: ../../../../src/tools/do_dssp. c, line: 471 *Fatal error:* Failed to execute command: /usr/local/bin/dssp -na dduigjCp ddDsSuzR > /dev/null 2> /dev/null 10 Kasım 2010 16:08 tarihinde #ZHAO LINA# <zhao0...@e.ntu.edu.sg> yazdı: > http://biskit.pasteur.fr/install/applications/dssp > > http://oldwww.gromacs.org/pipermail/gmx-users/2009-April/041004.html > > > http://www.gromacs.org/Documentation/Gromacs_Utilities/do_dssp?highlight=dssp > > HTH, > > lina > ------------------------------ > *From:* gmx-users-boun...@gromacs.org [gmx-users-boun...@gromacs.org] on > behalf of ahmet yıldırım [ahmedo...@gmail.com] > *Sent:* Wednesday, November 10, 2010 10:02 PM > *To:* Discussion list for GROMACS users > *Subject:* [gmx-users] DSSP error > > Hi, > > I installed in /usr/local/bin the DSSP program. And I set the environment > variable with a command such as "export DSSP=/usr/local/bin/dssp". > a...@ubuntu:/Desktop/work# do_dssp -s run.tpr -f run.xtc > ... > Selected 1: 'Protein' > There are 164 residues in your selected group > Opening library file /usr/share/gromacs/top/ss.map > Reading frame 0 time 0.000 > Back Off! I just backed up dduigjCp to ./#dduigjCp.1# > > ------------------------------------------------------- > Program do_dssp, VERSION 4.0.5 > Source code file: ../../../../src/tools/do_dssp.c, line: 471 > > *Fatal error:* > Failed to execute command: /usr/local/bin/dssp -na dduigjCp ddDsSuzR > > /dev/null 2> /dev/null > ------------------------------------------------------- > "Jesus Not Only Saves, He Also Frequently Makes Backups." (Myron Bradshaw) > > What should I do? > > Thanks in advance > > -- > Ahmet YILDIRIM > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- Ahmet YILDIRIM
-- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
