Hi Diana, Yeah, my reply was a bit off, as Vitaly had already pointed out. Lazy reading, sorry. But are these holes created by genbox, or are they already present in the acn solven box? Have you already checked all intermediate structures?
Cheers, Tsjerk On Nov 6, 2010 7:25 PM, "Diana Lousa" <dlo...@itqb.unl.pt> wrote: Hello, No, the hole don't correspond to parts of the protein sticking out on the other side. The protein is in the center of the box and the holes are not due to pbc issues. Diana On Fri, Nov 5, 2010 at 10:10 PM, Tsjerk Wassenaar <tsje...@gmail.com> wrote: > > > Hey, > > Do the holes match the parts of the protein sticking out on > the other side? > > Tsjerk ... > -- > > > gmx-users mailing list gmx-users@gromacs.org > > http://lists.gromacs.org/mailman/listinfo/gmx-u... > -- Diana Lousa PhD student Protein Modeling Laboratory ITQB/UNL Oeiras, Portugal -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
-- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
