When using the charmm forcefield, the following is the case: 1. ffnonbonded.itp - has listed paramters for tip3p (and other water models) OWT3 and HWT3 2. ffbonded.itp - does not have paramters for OWT3 and HWT3
Does this mean: 1. nonbonded parameters for tip3p are read from ffnonbonded.itp for ALL nonbonded interactions OR for water-water interactions are read from tip3p.itp file and for protein-water are read from ffnonbonded.itp? 2.bonded paramters for tip3p are read from tip3p.itp file? Pooja -- Quaerendo Invenietis-Seek and you shall discover.
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