Hi,  I was wondering whether gromacs can calculate a quantity called molecular 
surface area(MSA) which is different from solvent accessible surface area(SASA).
By definition, SASA of a molecule is the area of surface traced by center of a 
spherical water probe rolling on a vander wall surface of the given molecule. I 
think g_sas provides SASA.
But MSA is something different. It is the area generated by the part of the 
probe surface facing the given molecule. But, I am not sure whether gromacs can 
calculate it .
Jagannath

-- 
gmx-users mailing list    gmx-users@gromacs.org
http://lists.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at 
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
Please don't post (un)subscribe requests to the list. Use the 
www interface or send it to gmx-users-requ...@gromacs.org.
Can't post? Read http://www.gromacs.org/Support/Mailing_Lists

Reply via email to