Hi, Fatal error: [ file protein.itp, line 9 ]: Atom index (5) in position_restraints out of bounds (1-1). This probably means that you have inserted topology section "position_restraints" in a part belonging to a different molecule than you intended to. In that case move the "position_restraints" section to the right molecule.
Thanks for any clue. The part belongs to the one I want to restraints. I mean, the molecule is right. Thanks, lina
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