Please keep all Gromacs-related correspondence on the gmx-users list. As I have
said many times, I am not a private tutor. I am CC'ing this message to the
list; please continue all further discussion there.
There are a number of topology-generating scripts on the Gromacs website. Have
a look there:
http://www.gromacs.org/Downloads/User_contributions/Other_software
-Justin
swapnil chavan wrote:
Dear Dr. Lemkul,
I want to run MD simulation for ligand-protein complex. I can't use
dundee server for topology files preparation for this ligand. Could
you please tell me another way by which I can generate that topology
and forcefield files on my desk (without submission to online server).
Thank you in advance.
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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