Thank you Justin, I used an .m2p file to change the properties of my .xpm. I got an .eps file that I opened with Gimp. In order to visualize this .eps file, I have to put 200% in Gimp. But my problem is that my graph is too large, so I can't seem to print it out. I really to print the .eps file, so please is there a way to do it or do I have to split my trajectory and generate many .eps ?
Thanks, Carla On Fri, Oct 1, 2010 at 2:34 PM, Justin A. Lemkul <jalem...@vt.edu> wrote: > > > Carla Jamous wrote: > >> Hi everyone, >> >> Please I need some help visualizing an .xpm file. >> I tried to open my .xpm file (g_hbond matrix) with Gimp but It gives me >> red lines that I don't understand. >> So I converted my .xpm file into an .eps file with xpm2ps. When I try to >> open my .eps file, I get the legend: >> Hydrogen bonds >> white=none >> red=Present >> >> And the legend of my axis: x axis=time(ps) >> y axis=Hydrogen Bond index >> >> But I can't see the values: It means I see that there is an axis but it's >> a black bold line instead of values of time or number of atoms in hydrogen >> bonds. >> >> > You're not going to get any numbers in this plot (aside from hydrogen bond > indices). The matrix you're trying to plot is an existence matrix, a red > pixel if the hydrogen bond is present, a white one if none is present. You > can map which hydrogen bond is which from the hbond.ndx file. That is, once > you get it rendered properly (see below). > > > Please how can I visualize correctly my matrix? >> >> > You can alter its properties (proportions, x/y spacing) with a .m2p file. > There is an example in the online manual. If the plot is simply a straight > line, you'll probably want to decrease the x-spacing and increase the > y-spacing to make it look normal. > > -Justin > > Thank you >> >> Carla >> >> > -- > ======================================== > > Justin A. Lemkul > Ph.D. Candidate > ICTAS Doctoral Scholar > MILES-IGERT Trainee > Department of Biochemistry > Virginia Tech > Blacksburg, VA > jalemkul[at]vt.edu | (540) 231-9080 > http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin > > ======================================== > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the www interface > or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >
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