Hello everybody, I'm using g_clustsize to analyze clusters formed in my solution. However I noticed that not would get consistent results using the complete trajectory (containing both solvent and solute). To see the aggregation, using g_clustsize, I had to convert my trajectory to a file containing only the solute molecules. That's because -mol option considered all the molecules in the box (ignoring the index file) and as a result I always got a single cluster with all the solvent+solute molecules.
Is there a more efficient way to do this? Is this a bug in the program? I've been reading all information on this tool from the gmx-list and I could see some difficulties in dealing with it the way it is. Bests eef _______________________________________ Eudes Eterno Fileti Centro de Ciências Naturais e Humanas Universidade Federal do ABC — CCNH Av. dos Estados, 5001 Santo André - SP - Brasil CEP 09210-971 http://fileti.ufabc.edu.br
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