Hi, Indeed, the custom cmake target "install-mdrun" was designed to only install the mdrun binary and it does not install the libraries this is linked against when BUILD_SHARED_LIBS=ON.
I'm not completely sure that this is actually a bug, but to me it smells like one. I'll file a bug report and will sort this issue out. Thanks Justin for reporting! Cheers, -- Szilárd On Mon, Sep 6, 2010 at 5:37 PM, Justin A. Lemkul <jalem...@vt.edu> wrote: > > Hi All, > > I've discovered a new problem when using CMake. To recap, the system in > question is a PowerPC cluster running Yellowdog Linux with OpenMPI-1.4.2 and > gcc-4.2.2, linking against FFTW 3.0.1. > > I gave the following commands to build mdrun with CMake: > > cmake ../gromacs-4.5.1 > -DFFTW3F_LIBRARIES=/home/rdiv1001/fftw-3.0.1-linux/lib/libfftw3f.so > -DFFTW3F_INCLUDE_DIR=/home/rdiv1001/fftw-3.0.1-linux/include/ > -DCMAKE_INSTALL_PREFIX=/home/rdiv1001/gromacs-4.5_cmake-linux > -DGMX_BINARY_SUFFIX=_4.5_cmake_mpi –DGMX_THREADS=OFF –DGMX_X11=OFF > -DGMX_MPI=ON > -DMPI_COMPILER=/home/rdiv1001/compilers/openmpi-1.4.2/bin/mpicxx > -DMPI_INCLUDE_PATH=/home/rdiv1001/compilers/openmpi-1.4.2/include > > make mdrun > > make install-mdrun > > When attempting to invoke the resulting "mdrun_4.5.1_cmake_mpi" executable, > I > get the following error: > > /home/rdiv1001/gromacs-4.5.1_cmake-linux/bin/mdrun_4.5.1_cmake_mpi: error > while > loading shared libraries: libgmxpreprocess_mpi.so.6: cannot open shared > object > file: No such file or directory > > Adding -DBUILD_SHARED_LIBS=OFF solves the problem. Since (by default) > Gromacs > builds shared libraries, I thought this little problem should be reported, > even > though I can work around it. The cmake and subsequent make steps reported > no > problems whatsoever beyond a couple of minor compiler warnings, so I assumed > that everything had gone well. > > -Justin > > -- > ======================================== > > Justin A. Lemkul > Ph.D. Candidate > ICTAS Doctoral Scholar > MILES-IGERT Trainee > Department of Biochemistry > Virginia Tech > Blacksburg, VA > jalemkul[at]vt.edu | (540) 231-9080 > http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin > > ======================================== > > -- > gmx-users mailing list gmx-us...@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the www interface > or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
