Jennifer Williams wrote:
Hi,
Is there some way of making the make_ndx file interactive so that I
can include it in a script?
I would usually type in "a C_O and O_C" to select my atoms
I've tried altering the example on the webpage for making commands
interactive:
make_ndx -flags <<EOF
a C_O OC
q
EOF -f nn_1.pdb
try:
cat << EOF | make_ndx -f prot.pdb
a C_O
q
EOF
Jochen
but -flags doesn't seem to be recognized. Does anyone know a work around?
Thanks
Jenny
--
---------------------------------------------------
Dr. Jochen Hub
Molecular Biophysics group
Dept. of Cell & Molecular Biology
Uppsala University. Box 596, 75124 Uppsala, Sweden.
Phone: +46-18-4714451 Fax: +46-18-511755
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