[This should have gone to the list] Dear Ali,
gcc should be in /usr/bin (or some other bin, if you do not use Apple's compiler), not in /usr/lib nor /usr/local/lib. Do you have the developer tools installed? If not, get them from http://developer.apple.com/mac/ (they should also be on the OS DVDs, albeit in an older version). Regards, A. On Jul 22, 2010, at 8:30 , KACHMAR Ali wrote: > Dear Ansgar, > > the config.log reads: > > configure:3845: checking for cc option to accept ISO C89 > configure:3919: cc -c -g -O2 -I/Users/alikachmar/software/include conftest.c > >&5 > configure:3925: $? = 0 > configure:3948: result: none needed > configure:3977: checking for style of include used by make > configure:4005: result: GNU > configure:4030: checking dependency style of cc > configure:4121: result: gcc3 > configure:4419: checking dependency style of cc > configure:4510: result: gcc3 > configure:4535: checking for mpxlc > configure:4565: result: no > configure:4535: checking for mpicc > configure:4551: found /usr/bin/mpicc > configure:4562: result: mpicc > configure:4576: checking whether the MPI cc command works > configure:4600: mpicc -o conftest -g -O2 -I/Users/alikachmar/software/include > -L/Users/alikachmar/software/lib conftest.c >&5 > -------------------------------------------------------------------------- > The Open MPI wrapper compiler was unable to find the specified compiler > gcc in your PATH. > > Note that this compiler was either specified at configure time or in > one of several possible environment variables. > > -------------------------------------------------------------------------- > configure:4606: $? = 1 > configure: failed program was: > | /* confdefs.h. */ > | #define PACKAGE_NAME "gromacs" > | #define PACKAGE_TARNAME "gromacs" > | #define PACKAGE_VERSION "4.0.5" > | #define PACKAGE_STRING "gromacs 4.0.5" > | #define PACKAGE_BUGREPORT "gmx-users@gromacs.org" > | #define PACKAGE "gromacs" > | #define VERSION "4.0.5" > | #define GMX_SOFTWARE_SQRT > | #define GMX_QMMM_GAUSSIAN > | #define BUILD_TIME "Thu Jul 22 07:52:36 CEST 2010" > | #define BUILD_USER "alikach...@macintosh.local" > | #define BUILD_MACHINE "Darwin 9.8.0 i386" > | /* end confdefs.h. */ > | #include <mpi.h> > | int > | main () > | { > | int argc; char **argv; MPI_Init(&argc,&argv); > | ; > | return 0; > | } > configure:4618: error: Cannot compile and link MPI code with mpicc > > > my .bash_profile: > > > # Setting PATH for Python 2.7 > # The orginal version is saved in .bash_profile.pysave > PATH="/Library/Frameworks/Python.framework/Versions/2.7/bin:${PATH}" > export PATH > > # Setting PATH for MacPython 2.6 > # The orginal version is saved in .bash_profile.pysave > PATH="/Library/Frameworks/Python.framework/Versions/2.6/bin:${PATH}" > export PATH > > export PATH=$PATH:/usr/local/lib > export PATH=$PATH: /usr/bin/mpicc > export PATH=$PATH:/usr/local/lam/bin/ > > source /usr/local/gromacs/bin/GMXRC > > export CPPFLAGS=-I/usr/local/openmpi/include > > > PS: the gcc is under the directory: /usr/local/lib or /usr/lib. > > Thanks. > > Ali > > > > > From: ansgar.eszterm...@mpi-bpc.mpg.de > > To: gmx-users@gromacs.org > > Date: Wed, 21 Jul 2010 12:15:25 +0200 > > Subject: Re: [gmx-users] installation: gromacs on Mac.10.5.8 leopard > > > > > > On Jul 21, 2010, at 11:07 , KACHMAR Ali wrote: > > > > > checking whether the MPI cc command works... configure: error: Cannot > > > compile and link MPI code with mpicc > > > > > > This is the immediate problem: something goes wrong when compiling a test > > program with mpicc. If you look into the configure log, you should find a > > more detailed explanation of what went wrong (somewhere near the end). > > > > Regards, > > > > A. > > -- > > Ansgar Esztermann > > DV-Systemadministration > > Max-Planck-Institut für biophysikalische Chemie, Abteilung 105 > > > > -- > > gmx-users mailing list gmx-users@gromacs.org > > http://lists.gromacs.org/mailman/listinfo/gmx-users > > Please search the archive at http://www.gromacs.org/search before posting! > > Please don't post (un)subscribe requests to the list. Use the > > www interface or send it to gmx-users-requ...@gromacs.org. > > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > > De nouvelles Emoticones sur Messenger ? Téléchargez gratuitement les > émoticônes Summer ! -- Ansgar Esztermann DV-Systemadministration Max-Planck-Institut für biophysikalische Chemie, Abteilung 105 -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
