You can use the command trjconv to obtain them. trjconv -s md -f md -dt 1000 -o out.pdb
For more information, please see the help of trjconv. Zhang Cun > Message: 7 > Date: Fri, 16 Jul 2010 12:32:36 +0530 (IST) > From: sonali dhindwal <sonali11dhind...@yahoo.co.in> > Subject: [gmx-users] to visualise protein conformation after every 1ns > To: Discussion list for GROMACS users <gmx-users@gromacs.org> > Message-ID: <707407.78411...@web94615.mail.in2.yahoo.com> > Content-Type: text/plain; charset="utf-8" > > Hello All, > Sorry for a dumb question,,but I have a query that I want to run a 5 ns > simulation on one of the protein and I want to see protein's conformation > after every 1 ns,i.e to have a pdb file, so how should I proceed or changes > should I make in mdp file. > Thanks > > -- > Sonali Dhindwal > > -------------- next part -------------- > An HTML attachment was scrubbed... > URL: > http://lists.gromacs.org/pipermail/gmx-users/attachments/20100716/d4991a77/attachment.html > > ------------------------------ > > -- > gmx-users mailing list > gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > > End of gmx-users Digest, Vol 75, Issue 88 > ***************************************** > -- Blog: http://www.edwardpku.com/cun -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
