On 7/16/10 9:02 AM, sonali dhindwal wrote:
Hello All,
Sorry for a dumb question,,but I have a query that I want to run a 5 ns
simulation on one of the protein and I want to see protein's
conformation after every 1 ns,i.e to have a pdb file, so how should I
proceed or changes should I make in mdp file.
Thanks
--
Sonali Dhindwal
trjconv -o koko.pdb -dt 1000 -s -f -sep
--
David.
________________________________________________________________________
David van der Spoel, PhD, Professor of Biology
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596, 75124 Uppsala, Sweden
phone: 46 18 471 4205 fax: 46 18 511 755
sp...@xray.bmc.uu.se sp...@gromacs.org http://folding.bmc.uu.se
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