Using DSSP we can also calcuate the surface area, though it doesn't allow changes in probe diameter etc. it does calculate the surface area. I just wish to know whether the performance of DSSP is comparable to g_sas? Should it be used? -- Bhanu Prakash, BARC.
> Shalom Bhanu, > > g_sas calculates solvent accessible surface > DSSP find local secondary structure. > > So use g_sas for you calculation. > > Best, > Itamar > > > > On 15/07/10 4:57 PM, Bhanu Prakash Sandaka wrote: >> Which among DSSP and g_sas is better for calculating solvent accessible >> surface area of proteins? > > -- > > > "In theory, there is no difference between theory and practice. But, in > practice, there is." - Jan L.A. van de Snepscheut > > =========================================== > | Itamar Kass, Ph.D. > | Postdoctoral Research Fellow > | > | Department of Biochemistry and Molecular Biology > | Building 77 Clayton Campus > | Wellington Road > | Monash University, > | Victoria 3800 > | Australia > | > | Tel: +61 3 9902 9376 > | Fax: +61 3 9902 9500 > | E-mail: itamar.k...@monash.edu > ============================================ > -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
