Hi gromacs users I want to simulate pr-dna by gromacs.I read a article (Biophysical Journal 87(6) 3799–3813) inwhich helical parameters for DNA (rise, slide, twist, roll, tilt, shift) calculated by md simulation, but I did not understand two things:
How and what command these parameters were calculated? I read gromacs manual. in that there is only g helix and g helixorient for Protein specific analysis. can any body help me how to do this ?
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