Hi ,Mark:
I had announced my system is a dimer with each peptides have 6 residues.
I'm sorry if I didn't express it to be understood easily.
Can you please tell me why 13 coils are reasonable if my systems is a dimer?
regards,
Hsin-Lin
Hi, Justin:
I post my coordinate with protein translated by trjconv
By this gro file, I get 0 structure and 13 coils.
Haven't you been saying for what seems like weeks now that you have 12 residues in your
"protein"? If so...
<snip>
C 70 2.223 2.893
1.484 -0.0883 0.1244 -0.1837
6ASN O1
71 2.111 2.941 1.505 -0.2557
-0.4837 -0.1041
6ASN O2
72 2.313 2.953 1.419 -
0.5561 0.0660 0.4455
Here, there's quite clearly an internal COO and NH3... hence it seems that you
have two 6-residue chains. That's important data to be aware of, and to
communicate to people who might help... Our belief that you really had a
12-residue peptide excludes this kind of issue from trouble-shooting, which
ends up wasting everyone's time.
Mark
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