I've added a few flags and fixed some of the error messages but now I
am getting these messages. Does anyone have any ideas about what I am
doing wrong?
creating highway
Making all in contrib
make[3]: Nothing to be done for `all'.
make[3]: Nothing to be done for `all-am'.
Making all in admin
make[1]: Nothing to be done for `all'.
Making all in scripts
cat ./GMXRC.in | sed 's,@bindir\@,/Users/emily/gromacstrial/bin,' > GMXRC
cat ./GMXRC.csh.in <http://GMXRC.csh.in> | sed
's,@libdir\@,/Users/emily/gromacstrial/lib,' | \
sed 's,@bindir\@,/Users/emily/gromacstrial/bin,' | \
sed 's,@datadir\@,/Users/emily/gromacstrial/share,' | \
sed 's,@mandir\@,/Users/emily/gromacstrial/share/man,' > GMXRC.csh
cat ./GMXRC.bash.in <http://GMXRC.bash.in> | sed
's,@libdir\@,/Users/emily/gromacstrial/lib,' | \
sed 's,@bindir\@,/Users/emily/gromacstrial/bin,' | \
sed 's,@datadir\@,/Users/emily/gromacstrial/share,' | \
sed 's,@mandir\@,/Users/emily/gromacstrial/share/man,' > GMXRC.bash
cat ./GMXRC.zsh.in <http://GMXRC.zsh.in> | sed
's,@libdir\@,/Users/emily/gromacstrial/lib,' | \
sed 's,@bindir\@,/Users/emily/gromacstrial/bin,' | \
sed 's,@datadir\@,/Users/emily/gromacstrial/share,' | \
sed 's,@mandir\@,/Users/emily/gromacstrial/share/man,' > GMXRC.zsh
Making all in share
Making all in top
make[2]: Nothing to be done for `all'.
Making all in tutor
Making all in nmr1
make[3]: Nothing to be done for `all'.
Making all in nmr2
make[3]: Nothing to be done for `all'.
Making all in speptide
make[3]: Nothing to be done for `all'.
Making all in water
make[3]: Nothing to be done for `all'.
Making all in gmxdemo
make[3]: Nothing to be done for `all'.
Making all in methanol
make[3]: Nothing to be done for `all'.
Making all in mixed
make[3]: Nothing to be done for `all'.
make[3]: Nothing to be done for `all-am'.
Making all in template
cat ./Template.mak | \
sed 's,@LDFLAGS\@,-L/Users/emily/gromacstrial/lib
-L/Developer/opt/intel/Compiler/11.1/067/Frameworks/mkl/lib/em64t
-framework Accelerate,' | \
sed 's,@LIBS\@,-lmd -lgmx -lxml2 -L/usr/X11/lib -R/usr/X11/lib
-lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lm -lSM -lICE -lX11
,' | \
sed 's,@CFLAGS\@,-O3 -fomit-frame-pointer -finline-functions -Wall
-Wno-unused -funroll-all-loops -I/usr/include/libxml2
-I/Users/emily/gromacstrial/include
-I/Users/emily/gromacstrial/include/gromacs,' | \
sed 's,@CC\@,cc,' | \
sed 's,@host\@,x86_64-apple-darwin,' >Makefile.x86_64-apple-darwin
Making all in html
Making all in .
make[3]: Nothing to be done for `all-am'.
Making all in images
make[3]: Nothing to be done for `all'.
Making all in online
make[3]: Nothing to be done for `all'.
make[2]: Nothing to be done for `all-am'.
Making all in man
Making all in man1
make[2]: Nothing to be done for `all'.
make[2]: Nothing to be done for `all-am'.
make[1]: Nothing to be done for `all-am'.
nom27267d:gromacs-4.0.7-mbh emily$
On Wed, May 12, 2010 at 10:10 AM, Emily Curtis
<emilymariecur...@gmail.com <mailto:emilymariecur...@gmail.com>> wrote:
Here are all of the messages I get when I type "make". I have
been trying to figure this out based on mailing list emails but I
cant seem to find what I need to fix. Thank you for your help.
Emily-Curtis-MacBook-Pro:gromacs-4.0.7-mbh emily$ make
Making all in include
Making all in .
make[2]: Nothing to be done for `all-am'.
Making all in types
make[2]: Nothing to be done for `all'.
Making all in src
make all-recursive
Making all in gmxlib
Making all in nonbonded
Making all in nb_kernel_ia32_sse
/bin/sh ../../../../libtool --mode=compile cc -O3
-fomit-frame-pointer -finline-functions -Wall -Wno-unused
-funroll-all-loops -c -o nb_kernel010_ia32_sse.lo
nb_kernel010_ia32_sse.s
cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused
-funroll-all-loops -c nb_kernel010_ia32_sse.s -o
nb_kernel010_ia32_sse.o
nb_kernel010_ia32_sse.s:88:suffix or operands invalid for `push'
nb_kernel010_ia32_sse.s:90:suffix or operands invalid for `push'
nb_kernel010_ia32_sse.s:91:suffix or operands invalid for `push'
nb_kernel010_ia32_sse.s:92:suffix or operands invalid for `push'
nb_kernel010_ia32_sse.s:93:suffix or operands invalid for `push'
nb_kernel010_ia32_sse.s:94:suffix or operands invalid for `push'
nb_kernel010_ia32_sse.s:95:suffix or operands invalid for `push'
nb_kernel010_ia32_sse.s:796:suffix or operands invalid for `pop'
nb_kernel010_ia32_sse.s:797:suffix or operands invalid for `pop'
nb_kernel010_ia32_sse.s:798:suffix or operands invalid for `pop'
nb_kernel010_ia32_sse.s:799:suffix or operands invalid for `pop'
nb_kernel010_ia32_sse.s:800:suffix or operands invalid for `pop'
nb_kernel010_ia32_sse.s:801:suffix or operands invalid for `pop'
nb_kernel010_ia32_sse.s:866:suffix or operands invalid for `push'
nb_kernel010_ia32_sse.s:868:suffix or operands invalid for `push'
nb_kernel010_ia32_sse.s:869:suffix or operands invalid for `push'
nb_kernel010_ia32_sse.s:870:suffix or operands invalid for `push'
nb_kernel010_ia32_sse.s:871:suffix or operands invalid for `push'
nb_kernel010_ia32_sse.s:872:suffix or operands invalid for `push'
nb_kernel010_ia32_sse.s:873:suffix or operands invalid for `push'
nb_kernel010_ia32_sse.s:1345:suffix or operands invalid for `pop'
nb_kernel010_ia32_sse.s:1346:suffix or operands invalid for `pop'
nb_kernel010_ia32_sse.s:1347:suffix or operands invalid for `pop'
nb_kernel010_ia32_sse.s:1348:suffix or operands invalid for `pop'
nb_kernel010_ia32_sse.s:1349:suffix or operands invalid for `pop'
nb_kernel010_ia32_sse.s:1350:suffix or operands invalid for `pop'
make[5]: *** [nb_kernel010_ia32_sse.lo] Error 1
make[4]: *** [all-recursive] Error 1
make[3]: *** [all-recursive] Error 1
make[2]: *** [all-recursive] Error 1
make[1]: *** [all] Error 2
make: *** [all-recursive] Error 1
On Wed, May 12, 2010 at 3:46 AM, Erik Marklund
<er...@xray.bmc.uu.se <mailto:er...@xray.bmc.uu.se>> wrote:
Hi,
These error messages are not very informative, they just state
that something went wrong in the linking process. There ought
to be more descriptive messages prior to these linker errors.
Post those, then perhaps we can help you out.
Erik
Emily Curtis skrev:
Dr. Bonner,
I am trying to install gromacs on a mac. I am running
Leopard. I can configure successfully, however, when I
type "make" I am getting the same errors that you reported:
make[5]: *** [nb_kernel010_ppc_altivec.lo] Error 1
make[4]: *** [all-recursive] Error 1
make[3]: *** [all-recursive] Error 1
make[2]: *** [all-recursive] Error 1
make[1]: *** [all] Error 2
make: *** [all-recursive] Error 1
I read the gcc manual but I can't figure out what flags I
need to include. Did you ever figure out the flags you
needed to include to fix this? I appreciate your help
Emily
--
-----------------------------------------------
Erik Marklund, PhD student
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596, 75124 Uppsala, Sweden
phone: +46 18 471 4537 fax: +46 18 511 755
er...@xray.bmc.uu.se <mailto:er...@xray.bmc.uu.se>
http://folding.bmc.uu.se/
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