Hello Justin, Sorry. I was following the manual-4.0 for g_spatial. Maunal is giving differnet things. I checked with g_spartial -h. I got. Thanks NIlesh
On Tue, May 11, 2010 4:22 pm, Justin A. Lemkul wrote: > > > > Nilesh Dhumal wrote: > >> Hello Justin, >> I am doing solvation of glucose in ionic liquids. I want to show that >> glucose in surrounded by cation by ploting the iso-surface. Becuase of >> this I am using g_sdf. THe out put file is in .plt file. Can I get use >> gassview to plot the iso-surface. > > I have no idea what this is. The help information says this file is for > gOpenMol. > >> Do you think still I can use g_spatial to get the *.cub file. >> >> > > Read the first line of g_spatial -h. > > > -Justin > > >> Nilesh >> >> >> On Tue, May 11, 2010 1:42 pm, Justin A. Lemkul wrote: >> >> >>> Nilesh Dhumal wrote: >>> >>> >>>> Hello, >>>> I am trying to calculate spatial distribution function (SDF) for my >>>> system. Can I genrate the *.cube file or gaussian format file using >>>> sdf? I want to use gassview or molden software to plot. >>>> >>>> >>>> >>> Have you tried g_spatial -h? I think you will find what you're >>> looking for. >>> >>> -Justin >>> >>> >>> >>>> >>>> Thanks >>>> >>>> >>>> >>>> Nilesh >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>> -- >>> ======================================== >>> >>> >>> >>> Justin A. Lemkul >>> Ph.D. Candidate >>> ICTAS Doctoral Scholar >>> MILES-IGERT Trainee >>> Department of Biochemistry >>> Virginia Tech >>> Blacksburg, VA >>> jalemkul[at]vt.edu | (540) 231-9080 >>> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin >>> >>> >>> >>> ======================================== >>> -- >>> gmx-users mailing list gmx-users@gromacs.org >>> http://lists.gromacs.org/mailman/listinfo/gmx-users >>> Please search the archive at http://www.gromacs.org/search before >>> posting! Please don't post (un)subscribe requests to the list. Use the >>> www interface or send it to gmx-users-requ...@gromacs.org. Can't post? >>> Read >>> http://www.gromacs.org/mailing_lists/users.php >>> >>> >>> >>> >> >> >> > > > -- > ======================================== > > > Justin A. Lemkul > Ph.D. Candidate > ICTAS Doctoral Scholar > MILES-IGERT Trainee > Department of Biochemistry > Virginia Tech > Blacksburg, VA > jalemkul[at]vt.edu | (540) 231-9080 > http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin > > > ======================================== > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read > http://www.gromacs.org/mailing_lists/users.php > > > -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
