Yes, the PSF file has NBOND section and the script finished without any errors! But it does not show any bonded! Thank you！
--- 10年5月7日，周五, Justin A. Lemkul <jalem...@vt.edu> 写道： 发件人: Justin A. Lemkul <jalem...@vt.edu> 主题: Re: [gmx-users] how to show structure results in Martini coarse-grained simulation? 收件人: "Gromacs Users' List" <gmx-users@gromacs.org> 日期: 2010年5月7日,周五,下午7:10 xi zhao wrote: > > Yes， I load my coarse-grained PDB ,then load ps as data, but the stucture > still was full of points . > Is a proper "!NBOND" section generated in your .psf file? If the script finishes without any errors, the output should be viable. -Justin -- ======================================== Justin A. Lemkul Ph.D. Candidate ICTAS Doctoral Scholar MILES-IGERT Trainee Department of Biochemistry Virginia Tech Blacksburg, VA jalemkul[at]vt.edu | (540) 231-9080 http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin ======================================== -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
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