Dear Justin thanks for your attention I want to use simulated annealing to obtain global minimum for protein-dna structure. I will do first heating and then slowly cooling.
is my mdp file true, now? T-couple = brendsen ref-t = 300 annealing: single annealing_npoints: 5 annealing_time: 0 3 6 9 12 annealing_temp: 150 650 600 550 500 450 400 350 300 Best regards.
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