HI THe command => g_sas_mpi -f 6LYZ-MD566500.xtc -s 6LYZ-MD566500.tpr -o solvent-accessible-surface.xvg -oa atomic-sas.xvg -or residue-sas.xvg
In the solvent-accessible-surface.xvg => @ s0 legend "Hydrophobic" @ s1 legend "Hydrophilic" @ s2 legend "Total" @ s3 legend "D Gsolv" What does "Hydrophobic" mean here? What does "Hydrophilic" mean here? Does "Total = Hydrophobic+Hydrophilic" ? What does "D Gsolv" mean here? How can Gromacs define "Hydrophobic atoms" and "Hydrophilic atoms" ? What does the Area unit mean ? => "Area (nm\S2\N)" Thank you Lin
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