Hi, How do i calculate local destabilization of bilayer? I can calculate the thickness of the bilayer in the membrane protein with GridMAT-MD but i can't compare it with thickness of pure bilayer. Would you please elaborate it clearly?
when i calculated thickness of bilayer in membrane protein with GridMAT-MD i do following as: ./GridMAT-MD.pl param_example perl convert_to_gnuplot.pl 20*20_average.dat 20 20 gnuplot splot ' 20*20_average.dat' matrix using(1+$1):(1+$2):3 set pm3d map replot but "20x20_average_pbc.dat" contains a single column of numbers and 400 raw line. is it correct? Thanks very much in advance, Afsaneh Maleki
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