HI Justin, Thanks for the info.
I have followed your tutorial earlier, it really works, and that was for 1 protein, but if 2 or more different kinds of proteins are to be inserted then how to generate the a single topology file for all the proteins using pdb2gmx and also can you please let me know the other ways to insert the proteins in lipid bilayers.... Ram On Thu, Mar 4, 2010 at 4:36 PM, Justin A. Lemkul <jalem...@vt.edu> wrote: > > > ram bio wrote: >> >> Dear Gromacs Users, >> >> I would like to run molecular dynamics by inserting multiple proteins >> in the same lipid bilayer using gromacs, is it possible? if so, please > > Just about anything is possible :) > >> let me know if any tutorial is available or any kind of help is >> available.... >> > > There is a tutorial for a basic membrane protein system linked from the > Gromacs tutorials page. As for inserting multiple proteins in the membrane, > there are several ways to do it, but if you want to use InflateGRO, you'll > need the latest version: > > http://www.csb.bit.uni-bonn.de/inflategro.html > > -Justin > >> >> Thanks in advance, >> >> Ram > > -- > ======================================== > > Justin A. Lemkul > Ph.D. Candidate > ICTAS Doctoral Scholar > MILES-IGERT Trainee > Department of Biochemistry > Virginia Tech > Blacksburg, VA > jalemkul[at]vt.edu | (540) 231-9080 > http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin > > ======================================== > -- > gmx-users mailing list gmx-us...@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the www interface > or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
