Hi all, I am trying to translate the peptide within the simulation box. I have a box with dimensions of 3.8 3.0 3.0 nm^3, and I want to put the peptide on top of the box. In order to that I used the following command line:
editconf -f pep.pdb -box 3.8 3.0 3.0 -translate 0 0 1.5 -o trans.pdb The peptide is not translated, but sitting at the center of the box. Why is the case? Any suggestions? Thanks in advance -- Ozge Engin ★☆
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