Hello there, I have used g_rms and g_cluster for RNA structure analysis and noticed that they give me different rmsd values.
For example, calculating rmsd values using the g_rms gives me a minimum rmsd value of 0.7nm, but using g_cluster it gives me the minimum rmsd value of 0.3nm. Both uses the same atom (C3') for the rmsd calculation. Would someone clarify this issue? Many thanks, Segun
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