On 1/10/10 3:51 AM, leila karami wrote:
Hi
I have 2 questions about rmsd calculation:
1) why rmsd calculation is done on heavy atoms?
You calculate RMSD on whatever subset of atoms you wish; you are not necessarily
limited to heavy atoms only.
2) what means of mass weighted superposition (rmsd is calculated after
mass weighted superposition)
Sounds like some background reading is necessary :)
-Justin
Any help will highly appreciated!
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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