thank you, it worked. On Jan 7, 2010, at 12:20 PM, Erik Marklund wrote: > Valentina Tozzini skrev: >> dear all >> has anybody tried to install gromax (vs 4.0.7) on mac os x snow leopard >> (10.6.2)? >> I have the following problem: the configure script does not work. As you can >> see from the log (below) the configure error is >> configure: error: Cannot find fftw3f library >> >> however, I believe the fftw3f libraries are installed on my mac. I have done >> it with fink, and the command >>> fink list fftw >> >> gives as output >> >> i fftw 2.1.5-1015 Discrete Fourier Transform >> Library >> fftw-mpi 2.1.5-1015 Discrete Fourier Transform >> Library >> fftw-mpi-shlibs 2.1.5-1015 Discrete Fourier Transform >> Library >> i fftw-shlibs 2.1.5-1015 Discrete Fourier Transform >> Library >> i fftw3 3.2.2-1 Discrete Fourier Transform >> Lib (Ver 3) >> i fftw3-shlibs 3.2.2-1 Discrete Fourier Transform >> Lib (Ver 3) >> >> >> thus it seems that they are installed. >> >> thus, I conclude that they are there but not in the right place... but I >> don't know how to find them and how to make the installation work. >> can anybody help me? >> > Try looking in /sw/lib and /sw/include. > > /Erik >> >> ===================================================================== >> checking build system type... i386-apple-darwin10.2.0 >> checking host system type... i386-apple-darwin10.2.0 >> checking for a BSD-compatible install... /usr/bin/install -c >> checking whether build environment is sane... yes >> checking for a thread-safe mkdir -p... config/install-sh -c -d >> checking for gawk... no >> checking for mawk... no >> checking for nawk... no >> checking for awk... awk >> checking whether make sets $(MAKE)... yes >> checking how to create a ustar tar archive... gnutar >> checking for cc... cc >> checking for C compiler default output file name... a.out >> checking whether the C compiler works... yes >> checking whether we are cross compiling... no >> checking for suffix of executables... checking for suffix of object files... >> o >> checking whether we are using the GNU C compiler... yes >> checking whether cc accepts -g... yes >> checking for cc option to accept ISO C89... none needed >> checking for style of include used by make... GNU >> checking dependency style of cc... gcc3 >> checking dependency style of cc... gcc3 >> checking how to run the C preprocessor... cc -E >> checking whether cc accepts -O3... yes >> checking whether cc accepts -funroll-all-loops... yes >> checking whether cc accepts -O3 -fomit-frame-pointer -finline-functions >> -Wall -Wno-unused -funroll-all-loops... yes >> checking for grep that handles long lines and -e... /usr/bin/grep >> checking for egrep... /usr/bin/grep -E >> checking for ANSI C header files... yes >> checking for sys/types.h... yes >> checking for sys/stat.h... yes >> checking for stdlib.h... yes >> checking for string.h... yes >> checking for memory.h... yes >> checking for strings.h... yes >> checking for inttypes.h... yes >> checking for stdint.h... yes >> checking for unistd.h... yes >> checking whether byte ordering is bigendian... no >> checking for int... yes >> checking size of int... 4 >> checking for long int... yes >> checking size of long int... 8 >> checking for long long int... yes >> checking size of long long int... 8 >> checking for off_t... yes >> checking size of off_t... 8 >> checking that size_t can hold pointers... yes >> checking floating-point format... IEEE754 (little-endian byte and word order) >> checking for a BSD-compatible install... /usr/bin/install -c >> checking whether ln -s works... yes >> checking whether make sets $(MAKE)... (cached) yes >> checking for a sed that does not truncate output... /usr/bin/sed >> checking for ld used by cc... /usr/libexec/gcc/i686-apple-darwin10/4.2.1/ld >> checking if the linker (/usr/libexec/gcc/i686-apple-darwin10/4.2.1/ld) is >> GNU ld... no >> checking for /usr/libexec/gcc/i686-apple-darwin10/4.2.1/ld option to reload >> object files... -r >> checking for BSD-compatible nm... /usr/bin/nm >> checking how to recognise dependent libraries... pass_all >> checking dlfcn.h usability... yes >> checking dlfcn.h presence... yes >> checking for dlfcn.h... yes >> checking for g++... g++ >> checking whether we are using the GNU C++ compiler... yes >> checking whether g++ accepts -g... yes >> checking dependency style of g++... gcc3 >> checking how to run the C++ preprocessor... g++ -E >> checking the maximum length of command line arguments... 196608 >> checking command to parse /usr/bin/nm output from cc object... ok >> checking for objdir... .libs >> checking for ar... ar >> checking for ranlib... ranlib >> checking for strip... strip >> checking if cc supports -fno-rtti -fno-exceptions... no >> checking for cc option to produce PIC... -fno-common >> checking if cc PIC flag -fno-common works... yes >> checking if cc static flag -static works... no >> checking if cc supports -c -o file.o... yes >> checking whether the cc linker >> (/usr/libexec/gcc/i686-apple-darwin10/4.2.1/ld) supports shared libraries... >> yes >> checking dynamic linker characteristics... darwin10.2.0 dyld >> checking how to hardcode library paths into programs... immediate >> checking whether stripping libraries is possible... yes >> checking if libtool supports shared libraries... yes >> checking whether to build shared libraries... no >> checking whether to build static libraries... yes >> configure: creating libtool >> appending configuration tag "CXX" to libtool >> checking for ld used by g++... /usr/libexec/gcc/i686-apple-darwin10/4.2.1/ld >> checking if the linker (/usr/libexec/gcc/i686-apple-darwin10/4.2.1/ld) is >> GNU ld... no >> checking whether the g++ linker >> (/usr/libexec/gcc/i686-apple-darwin10/4.2.1/ld) supports shared libraries... >> yes >> checking for g++ option to produce PIC... -fno-common >> checking if g++ PIC flag -fno-common works... yes >> checking if g++ static flag -static works... no >> checking if g++ supports -c -o file.o... yes >> checking whether the g++ linker >> (/usr/libexec/gcc/i686-apple-darwin10/4.2.1/ld) supports shared libraries... >> yes >> checking dynamic linker characteristics... darwin10.2.0 dyld >> checking how to hardcode library paths into programs... immediate >> appending configuration tag "F77" to libtool >> checking for special C compiler options needed for large files... no >> checking for _FILE_OFFSET_BITS value needed for large files... no >> checking for _LARGEFILE_SOURCE value needed for large files... no >> checking for sqrt in -lm... yes >> checking for fftw3.h... yes >> checking for main in -lfftw3f... no >> configure: error: Cannot find fftw3f library >> >> >> >> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >> Valentina Tozzini >> NEST-INFM-CNR, Scuola Normale Superiore >> Piazza San Silvestro, 12 - 56127 Pisa (PI) - Italy >> >> Phone: +39 050 509 433 Fax: +39 050 509 417 >> Email: tozz...@nest.sns.it Web: www.nest.sns.it/tozzini >> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >> >> >> >> >> >> > > > -- > ----------------------------------------------- > Erik Marklund, PhD student > Laboratory of Molecular Biophysics, > Dept. of Cell and Molecular Biology, Uppsala University. > Husargatan 3, Box 596, 75124 Uppsala, Sweden > phone: +46 18 471 4537 fax: +46 18 511 755 > er...@xray.bmc.uu.se http://xray.bmc.uu.se/molbiophys > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the www interface > or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/mailing_lists/users.php
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Valentina Tozzini NEST-INFM-CNR, Scuola Normale Superiore Piazza San Silvestro, 12 - 56127 Pisa (PI) - Italy Phone: +39 050 509 433 Fax: +39 050 509 417 Email: tozz...@nest.sns.it Web: www.nest.sns.it/tozzini ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
