On 01/01/10, venkat <vka...@yahoo.com> wrote:
I did installed fftw , not sure it is completed.
while doing make command , got the following error mesage
$ configure -enable-threads --enable-float--prefix=/home/pgm/fftw
This command is hopelessly garbled. Computers are literal, and so must you be when using them. Like most GNU tools, configure commands take double hyphens for options, and a space between options. GROMACS commands take single hyphens for their options, however.
Mark
$make
cp fftw_wisdom.1 fftwf-wisdom.1
make all-am
/bin/sh ../libtool --tag=CC --mode=link gcc -std=gnu99 -O3 -fomit-frame-pointer -fstrict-aliasing -ffast-math -mpentiumpro -pthread -L/home/vk/pgm/fftw/lib -o fftwf-wisdom fftw-wisdom.o ../tests/bench.o ../tests/fftw-bench.o ../threads/libfftw3f_threads.la ../libfftw3f.la ../libbench2/libbench2.a -lm
libtool: link: gcc -std=gnu99 -O3 -fomit-frame-pointer -fstrict-aliasing -ffast-math -mpentiumpro -pthread -o fftwf-wisdom fftw-wisdom.o ../tests/bench.o ../tests/fftw-bench.o -L/home/vk/pgm/fftw/lib ../threads/.libs/libfftw3f_threads.a ../.libs/libfftw3f.a ../libbench2/libbench2.a -lm -pthread
Making all in m4
make[2]: Nothing to be done for `all'.
any help
----- Original Message ----
From: Justin A. Lemkul <jalem...@vt.edu>
To: Discussion list for GROMACS users <gmx-users@gromacs.org>
Sent: Wed, December 30, 2009 9:54:42 PM
Subject: Re: [gmx-users] gromacs 4.06 binary for linux -redhat
venkat wrote:
>
>
> Hi
> I am new to GROMACS, like to use it. I would be appreciate if anyone can direct me to the right place where I could
> get the linux binary either x32/x64 - redhat.
>
Binaries for newer versions probably haven't been made yet. Your subject line points to version 4.0.6, which was a broken release anyway, and was replaced by version 4.0.7.
> I could not compile the source cause it is looking for FFTW etc.,.
Then you should follow the step-by-step installation instructions. FFT libraries are a prerequisite for Gromacs. Please see the following:
http://www.gromacs.org/index.php?title=Download_%26_Installation/Installation_Instructions
-Justin
> thanks
> venkat
>
>
>
-- ========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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