Dear Henry, For Plot two .xgv files u can use following command
*xmgrace file1.xvg file2.xvg* colour will come automatically in above case i think file1.xvg will be in BLACK and file2.xvg will be in RED (Its default), You can change aslo. U can add other .xvg file accordingly in above command to get plot for all the .xvg files in a single graph :) Regards Rituraj On Tue, Dec 8, 2009 at 4:30 PM, <gmx-users-requ...@gromacs.org> wrote: > Send gmx-users mailing list submissions to > gmx-users@gromacs.org > > To subscribe or unsubscribe via the World Wide Web, visit > http://lists.gromacs.org/mailman/listinfo/gmx-users > or, via email, send a message with subject or body 'help' to > gmx-users-requ...@gromacs.org > > You can reach the person managing the list at > gmx-users-ow...@gromacs.org > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of gmx-users digest..." > > > Today's Topics: > > 1. mpispawn.c:303 Unexpected exit status (shivkumar bale) > 2. gromacs.. (Henry Ynag) > 3. Re: Two Types of van de Waals interactions in one system > (XAvier Periole) > 4. xmgrace plot (Henry Yang) > 5. Re: xmgrace plot (Jon Fuller) > > > ---------------------------------------------------------------------- > > Message: 1 > Date: Mon, 7 Dec 2009 23:15:44 -0600 > From: shivkumar bale <kumarb...@gmail.com> > Subject: [gmx-users] mpispawn.c:303 Unexpected exit status > To: gmx-users@gromacs.org > Message-ID: > <2e20ba9d0912072115idce3ed6w3bfa288eeab1a...@mail.gmail.com> > Content-Type: text/plain; charset="iso-8859-1" > > Skipped content of type multipart/alternative-------------- next part > -------------- > A non-text attachment was scrubbed... > Name: mdRun300.mdp > Type: application/octet-stream > Size: 1502 bytes > Desc: not available > Url : > http://lists.gromacs.org/pipermail/gmx-users/attachments/20091207/bba246ab/mdRun300-0001.obj > > ------------------------------ > > Message: 2 > Date: Tue, 8 Dec 2009 01:19:16 -0800 (PST) > From: Henry Ynag <henryy...@yahoo.com> > Subject: [gmx-users] gromacs.. > To: gmx-users@gromacs.org > Message-ID: <903781.22164...@web113919.mail.gq1.yahoo.com> > Content-Type: text/plain; charset="us-ascii" > > Hello everyone, > > I am quite new to gromacs. I would like to know how can I calculate the > area per lipid for my simulations. I am running simulations with 128 DMPC > lipid bilayer. I have the output of 30 ns simulations. Also how can i make > a graph with this output. > > Any help! > > Henry > Biochemistry > > > > > -------------- next part -------------- > An HTML attachment was scrubbed... > URL: > http://lists.gromacs.org/pipermail/gmx-users/attachments/20091208/3059c139/attachment-0001.html > > ------------------------------ > > Message: 3 > Date: Tue, 8 Dec 2009 10:52:00 +0100 > From: XAvier Periole <x.peri...@rug.nl> > Subject: Re: [gmx-users] Two Types of van de Waals interactions in one > system > To: Discussion list for GROMACS users <gmx-users@gromacs.org> > Message-ID: <7ecbcabe-b1af-45e5-9723-1d87364fb...@rug.nl> > Content-Type: text/plain; charset=US-ASCII; format=flowed; delsp=yes > > > One solution would be to use tabulated potential for which the > analytical form does not matter. > > On Dec 8, 2009, at 4:29 AM, Mark Abraham wrote: > > > hong bingbing wrote: > >> Dear all, > >> Has anyone tried to use 2 van de Waals interaction types in one > >> system? For example, the system includes two components A and B. > >> The van de Waas interaction for A is LJ type, while for B > >> Buckingham form is used. Can GROMACS support two forms > >> simultaneously? > > > > No. How would you describe the vdW interaction between an atom from > > A and one from B? > > > > If the reason for this question is based on a desire to mix two > > force fields - don't. > > > > Mark > > -- > > gmx-users mailing list gmx-users@gromacs.org > > http://lists.gromacs.org/mailman/listinfo/gmx-users > > Please search the archive at http://www.gromacs.org/search before > > posting! > > Please don't post (un)subscribe requests to the list. Use the www > > interface or send it to gmx-users-requ...@gromacs.org. > > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > > > > ------------------------------ > > Message: 4 > Date: Tue, 8 Dec 2009 02:51:12 -0800 (PST) > From: Henry Yang <henryy...@yahoo.com> > Subject: [gmx-users] xmgrace plot > To: gromacs <gmx-users@gromacs.org> > Message-ID: <975347.17369...@web113912.mail.gq1.yahoo.com> > Content-Type: text/plain; charset="us-ascii" > > Hello everyone, > > I am also new to xmgrace. I have two .xvg file which I have got from the > simulation data analysis. How can I open both of them in one xmgrace graph > with two distinct color? How can I proceed with the comand? > > I know this is very basic but I have to learn! > Pls give me response. > > Henry > Biochemistry > > > > -------------- next part -------------- > An HTML attachment was scrubbed... > URL: > http://lists.gromacs.org/pipermail/gmx-users/attachments/20091208/bcf81b0d/attachment-0001.html > > ------------------------------ > > Message: 5 > Date: Tue, 8 Dec 2009 10:53:25 +0000 > From: Jon Fuller <jonathan.ful...@gmail.com> > Subject: Re: [gmx-users] xmgrace plot > To: Discussion list for GROMACS users <gmx-users@gromacs.org> > Message-ID: > <76dd1c620912080253t6b8ce2dehfa65e42bda43a...@mail.gmail.com> > Content-Type: text/plain; charset="iso-8859-1" > > >From the command line you can type xmgrace file1.xvg file2.xvg (where > file1 > and file2 are the filenames!). > > Jon > > 2009/12/8 Henry Yang <henryy...@yahoo.com> > > > Hello everyone, > > > > I am also new to xmgrace. I have two .xvg file which I have got from the > > simulation data analysis. How can I open both of them in one xmgrace > graph > > with two distinct color? How can I proceed with the comand? > > > > I know this is very basic but I have to learn! > > Pls give me response. > > > > Henry > > Biochemistry > > > > > > > > -- > > gmx-users mailing list gmx-users@gromacs.org > > http://lists.gromacs.org/mailman/listinfo/gmx-users > > Please search the archive at http://www.gromacs.org/search before > posting! > > Please don't post (un)subscribe requests to the list. Use the > > www interface or send it to gmx-users-requ...@gromacs.org. > > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > > > -------------- next part -------------- > An HTML attachment was scrubbed... > URL: > http://lists.gromacs.org/pipermail/gmx-users/attachments/20091208/a1d92248/attachment-0001.html > > ------------------------------ > > -- > gmx-users mailing list > gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > > End of gmx-users Digest, Vol 68, Issue 44 > ***************************************** > -- -------------------------------------------------------------------------------------------------- RITURAJ PUROHIT Assistant Professor, Bioinformatics Division School of Bio-sciences and Technology (SBST) Vellore Institute of Technology, University Address: SBST, VIT University, Vellore-632014,Tamilnadu, India. Phone: +91-416-2202638 (Lab), +91-9944649073 (Mobile) Fax; +91-416-2243092, E-mail: ritu...@vit.ac.in ------------------------------------------------------------------------------------------------------ "The future belongs to those who believe in the beauty of their dreams." --------------------------------------------------------------------------------------------------------
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