Hi Justin, Yes I understand what you are saying.
Thank you amit On Wed, Dec 2, 2009 at 12:50 PM, Justin A. Lemkul <jalem...@vt.edu> wrote: > > > Amit Choubey wrote: > > >> >> On Wed, Dec 2, 2009 at 12:07 PM, Justin A. Lemkul <jalem...@vt.edu<mailto: >> jalem...@vt.edu>> wrote: >> >> >> >> Amit Choubey wrote: >> >> Hi Mark, >> >> That is true. But what does the manual refer to when it says >> the first graph is the average, the rest are the individual angles >> >> what and where are the rest? I am only curious because there >> might be a hidden feature that could be useful for me. >> >> >> Read all of the help information; the command in the .xvg file below >> shows that you're not yet using the right output options. Hint: >> look at the sentence in g_angle -h before the one quoted above, as >> well as the -ov flag... >> >> >> -ov flag gives the average value of angle of the group with time. This is >> not very useful for me right now. >> > > By using -ov -all, the first column is the average of all groups analyzed, > and probably is not useful for your purpose, but the subsequent columns are > the value of the chosen angles at each time frame. From these data, you > could pretty easily write a script that calculates the distributions by > binning. > > -Justin > > > -- > ======================================== > > Justin A. Lemkul > Ph.D. Candidate > ICTAS Doctoral Scholar > MILES-IGERT Trainee > Department of Biochemistry > Virginia Tech > Blacksburg, VA > jalemkul[at]vt.edu | (540) 231-9080 > http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin > > ======================================== > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the www interface > or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/mailing_lists/users.php >
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