AntonioLeung wrote:
Hi, all,
I am newcomer of gmx, and I want to know how to make a porcupine plot after a essential MD. I found it looks nicer than linear interpolations between two extremes.
Thanks in advance!


There are not tools in Gromacs to do such a thing, but a simple Google search will turn up a number of external software/servers that can. For example, the first Google hit:

http://s12-ap550.bioch.ox.ac.uk:8078/dynamite_html/dynatraj_splash_v1.5.html

-Justin

Atonio


--
========================================

Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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