On Wed, Nov 18, 2009 at 9:29 PM, sukesh chandra gain <suk...@atc.tcs.com>wrote:
> Dear All, > I started a protein simulation for 100ps with octahedron box. After > completion of that run I visualized the protein at the centre of the > octahedron box by using trjconv. > Then I have extended the simulation for another 500 ps by using tpbconv. > But now it is showing as cubic box when I see the result after using > trajconv (additionally some part of the protein is out of the box). This could only be a visualization glitch. Try using trjconv options. amit > I do not have any clue how the box type has been changed or where could I > go wrong. > Please comment. > Thank you, > Cheers, > Sukesh > > -- > Sukesh Chandra Gain > TCS Innovation Labs > Tata Consultancy Services Ltd. > 'Deccan Park', Madhapur > Hyderabad 500081 > Phone: +91 40 6667 3572 > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the www interface > or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/mailing_lists/users.php >
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