Happens with a single frame in a gro file as well, for example in this simple case:
1) take a gro file for the full system 2) use trjconv to save a subset of the system in a new gro file 3) create and index file for that 4) try to use g_dist on the index file from 3) and gro file from 2) 5) enjoy segfault Does anyone else see this, or am I doing something wrong? Will be happy to post more details if needed. Ondrej On Mon, Nov 16, 2009 at 18:22, Ondrej Marsalek <ondrej.marsa...@gmail.com> wrote: > Dear all, > > as a quick check, before I dive deeper, I would like to ask the following. > > I have a simulation (protein in water and counterions) for which I > have defined an xtc output group (protein and conunterions). If I try > to run trjconv or g_dist over this xtc file (and a proper reduced > index file), I get a segmentation fault. I also get this if I filter > out water from the full trr file and try to process the rest. If I use > the original trr file for g_dist or trjconv, it works just fine. > Before I try to resolve this, I'd like to know if anyone has > encountered anything like this. Tested on 4.0.4 and 4.0.5. > > In case this will need a bug report - are tpr files portable, is it OK > to attach one to a bug report? > > Thanks, > Ondrej > -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
