Dear all, how can I create the mapping section for "g_fg2cg" in the atomistic *.itp file? The handout from the Coarse Graining Workshop 2009 says that pdb2gmx has this ability but I can't find it: http://www.csc.fi/english/research/sciences/chemistry/courses/cg-2009/CGWS_Tutorial.pdf/download.
By running pdb2gmx of both, GROMACS version 4 and the reverse-mapping GROMACS (including g_fg2cg), I didn't get any result similar to this mapping section in my output files. Maybe now there's also another way to setup a CG model for the MARTINI force field. (?) Many thanks for your answers. Nice greetings, Thomas -- Thomas H. Schmidt, PhD student Computational Structural Biology Chair of Life Science Informatics, B-IT LIMES-Institute, University of Bonn Dahlmannstrasse 2, D-53113 Bonn, Germany Phone: +49-(0)228-2699 323 Fax: +49-(0)228-2699 341 http://www.csb.bit.uni-bonn.de _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
