Dear all, I have been trying to install gromacs on my IBM E1350 linux cluster (amd86_64). I've managed to run cofigure without any error but I get the following error during make step.
mpicc -DHAVE_CONFIG_H -I. -I../../src -I../../include -DGMXLIBDIR=\"/CHPC/home/chpc/Test/oscar/gromacs-4.0.5/share/top\" -I/CHPC/home/chpc/Test/oscar/fftw-3.1.3/include -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -funroll-all-loops -std=gnu99 -MT grompp.o -MD -MP -MF .deps/grompp.Tpo -c -o grompp.o grompp.c mv -f .deps/grompp.Tpo .deps/grompp.Po /bin/sh ../../libtool --tag=CC --mode=link mpicc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -funroll-all-loops -std=gnu99 -L//CHPC/home/chpc/Test/oscar/fftw-3.1.3/lib -o grompp grompp.o libgmxpreprocess_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la -L/usr/X11/lib -lnsl -lfftw3f -lm -lX11 mpicc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -funroll-all-loops -std=gnu99 -o grompp grompp.o -L//CHPC/home/chpc/Test/oscar/fftw-3.1.3/lib ./.libs/libgmxpreprocess_mpi.a -L/usr/X11/lib ../mdlib/.libs/libmd_mpi.a /CHPC/home/chpc/Test/oscar/gromacs-4.0.5/src/gmxlib/.libs/libgmx_mpi.a ../gmxlib/.libs/libgmx_mpi.a -lnsl /CHPC/home/chpc/Test/oscar/fftw-3.1.3/lib/libfftw3f.a -lm -lX11 /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.3/../../../../x86_64-suse-linux/bin/ld: skipping incompatible /usr/X11/lib/libX11.so when searching for -lX11 /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.3/../../../../x86_64-suse-linux/bin/ld: skipping incompatible /usr/X11/lib/libX11.a when searching for -lX11 /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.3/../../../../x86_64-suse-linux/bin/ld: skipping incompatible /usr/X11/lib/libX11.so when searching for -lX11 /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.3/../../../../x86_64-suse-linux/bin/ld: skipping incompatible /usr/X11/lib/libX11.a when searching for -lX11 /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.3/../../../../x86_64-suse-linux/bin/ld: cannot find -lX11 collect2: ld returned 1 exit status make[3]: *** [grompp] Error 1 make[3]: Leaving directory `/CHPC/home/chpc/Test/oscar/gromacs-4.0.5/src/kernel' make[2]: *** [all-recursive] Error 1 Please help. Regards, Nkwe -- This message is subject to the CSIR's copyright terms and conditions, e-mail legal notice, and implemented Open Document Format (ODF) standard. The full disclaimer details can be found at http://www.csir.co.za/disclaimer.html. This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean. MailScanner thanks Transtec Computers for their support. _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
