Dear gromacs users,
I've been using gromacs to run a simulation of  a protein with a cofactor and a 
ligand. i had a problem while running the simulation; the cofactor, ligand and 
the substrate molecule were spaced away from the protein in the solvent box., 
thereby creating literally zero interaction energy.
How do I solve this problem and place all the molecules together in the solvent 
box?
Thanking you,.
Anand.




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