Ragnarok sdf wrote:
I came across a tool for making "porcupine" plots out of my PCA
analysis, but first I need to perform the analysis with a program that
accepts .cdr (amber traj) file format (the name of the program is
PCAZIP). I would like to know if there is a way to convert my .trr
trajectories into these .cdr ones.
Or, in case you have a better solution for my problem, like a
different analysis tool or something like that, it would also be very
helpful.
If disk space is not limiting, and high accuracy is not required, then
using trjconv to convert to PDB and whatever tool AMBER has to convert
to the .cdr format would work.
Mark
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