Dear all, I want to extend the membrane into 512 POPC with the starting structure of 128 POPC. I 've used :- editconf -f xxx.pdb -scale 2 2 1 -o zzz.pdb. I noticed that the pdb file that generated by editconf have only 1 set of 128 popc. Using vmd, the extended structure is in pieces, the no bond between each atom. When i checked the pdb file, i didn't find any atomic coordination for the extended set of POPC. Did i missed out anything here? or what I've done is wrong here?
When i used genconf , the extended structure looks fine. But, i found some discussion regarding genconf whereby the structure will not be in one pieces if this command is used. Please advice. Thank in advance. Regards, bing
_______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
