P.R.Anand Narayanan wrote:
Dear users,
How will I be able to run a simulation on a protein with 2chains if it
is broken.
I heard that the protein might have been broken which was observed from
the failure of energy minimization which ended in just 1 step.
"Broken" is a very generic term for any sort of bad geometry or
improperly-manipulated coordinates. If you can provide a more detailed
description of your system, what you have done to it (complete with actual
command lines for any Gromacs tools you have used), etc. you're more likely to
get a useful response.
-Justin
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--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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