On Mon, Jun 29, 2009 at 1:51 PM, Mark Abraham <mark.abra...@anu.edu.au>wrote:
> Manik Mayur wrote: > >> Hi, >> I am trying to install GROMACS-4.0.5, but while making mpirun with the >> option --enable-mpi it gives the following sets of errors: >> >> ../gromacs-4.0.5/src/gmxlib/.libs/libgmx_mpi.so: undefined reference to >> `ah_find' >> ../gromacs-4.0.5/src/gmxlib/.libs/libgmx_mpi.so: undefined reference to >> `lam_ksignal' >> ../gromacs-4.0.5/src/gmxlib/.libs/libgmx_mpi.so: undefined reference to >> `lam_arr_append' >> ../gromacs-4.0.5/src/gmxlib/.libs/libgmx_mpi.so: undefined reference to >> `ah_delete' >> ../gromacs-4.0.5/src/gmxlib/.libs/libgmx_mpi.so: undefined reference to >> `lam_errorstr' >> ../gromacs-4.0.5/src/gmxlib/.libs/libgmx_mpi.so: undefined reference to >> `lam_ssi_cr_did' >> ../gromacs-4.0.5/src/gmxlib/.libs/libgmx_mpi.so: undefined reference to >> `lam_rtrnameget' >> ../gromacs-4.0.5/src/gmxlib/.libs/libgmx_mpi.so: undefined reference to >> `lam_mutex_trylock' >> ................... >> ................... >> >> The important thing to note is that I have successfully compiled and >> installed mpi version of mdrun on the same machine, for GROMACS-4.0.4. >> What am I missing here? >> > > Probably you've changed/removed your MPI library between configure and > make, or between versions of GROMACS, or something similar. Unpack a clean > GROMACS tarball and start again with configure. > Not that I remember doing so, I will do the clean reinstall anyway. Thanks, Mark > _______________________________________________ > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the www interface > or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > Manik Mayur Graduate student Microfluidics Lab Dept. of Mechanical Engg. IIT Kharagpur INDIA
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