On Thu, 2009-06-11 at 14:35 +0800, Thamu wrote: > Hi > > Recently I successfully installed the gromacs-4.0.5 mpi > version. > I could run in 8 cpu. but the speed is very slow. > Total number of atoms in the system is 78424. > while running all 8 cpu showing 95-100% CPU.
That's normal for a system that atoms/cpu ratio. What's your system and what mdp file are you using? -- ------------------------------------------------------ Jussi Lehtola, FM, Tohtorikoulutettava Fysiikan laitos, Helsingin Yliopisto jussi.leht...@helsinki.fi, p. 191 50632 ------------------------------------------------------ Mr. Jussi Lehtola, M. Sc., Doctoral Student Department of Physics, University of Helsinki, Finland jussi.leht...@helsinki.fi ------------------------------------------------------ _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
