Makoto Yoneya wrote:
Dear Mark and GMX users:

Mark wrote:
Where did cyggmx-4.dll come from? What build tools are you using?
No GROMACS distribution version of src/gmxlib/Makefile.in has such a make target - I checked 3.3.1, 3.3.3 and 4.0.5. What conditions induced its creation?

Could you try a tiny patch, http://staff.aist.go.jp/makoto-yoneya/MDonWINPC/gromacs-3.3.3-cygwin-shared.
patch
, at the gromacs-3.3.3 dir and then,
./configure --without-x --with-fft=fftpack --enable-shared
and make.

OK that worked for 3.3.3 - I got a 1.8MB cyggmx-4.dll installed along with a working 600K mdrun. The catch is that this extra "-no-undefined" is an argument to libtool, rather than the underlying linker. You can use "./configure CFLAGS=blah LDFLAGS=blahblah" to pass things to the compiler and linker, but I don't know of technique to pass things to libtool without the editing you suggest. I'll see if I can figure something out, check it on 4.0.5 and wikify the outcome.

Mark
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