I made a radial-axial density plot using g_densmap. What one gets out is a 3-D number density as a function of radial and axial distance from the defined axis. So which is the third direction, and how is it averaged out? Sorry if this is a very elementary question
g_densmap -f protein.xtc -s protein.tpr -n proteinndx -o protein.xpm -b 10000 -e 30000 -bin 0.01 -amax 2 -rmax 2 -dmax 40 -- Maria G. Technical University of Denmark Copenhagen
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