This is the new entry I added to the rtp file.
[ PDM ]
[ atoms ]
SI SI 0.300 1
CH3 opls_069 0.000 1
O opls_108 -0.300 1
[ bonds ]
SI O 0.190 158805.0
SI CH3 0.164 293160.0
[ dihedrals ]
CH3 SI O SI 3.77 3 0
SI O SI CH3 3.77 3 0
O SI O SI 3.77 3 0
On Wed, Apr 29, 2009 at 3:57 PM, Justin A. Lemkul <jalem...@vt.edu> wrote:
>
>
> Yanmei Song wrote:
>
>> -------------------------------------------------------
>> Program pdb2gmx, VERSION 3.3.3
>> Source code file: resall.c, line: 289
>>
>> Fatal error:
>> in .rtp file at line:
>>
>>
>> -------------------------------------------------------
>
> Well that's not a terribly helpful error message, is it? :)
>
> There is probably something wrong with the .rtp entry you created. If you
> can post that, perhaps someone can spot it.
>
> -Justin
>
> --
> ========================================
>
> Justin A. Lemkul
> Ph.D. Candidate
> ICTAS Doctoral Scholar
> Department of Biochemistry
> Virginia Tech
> Blacksburg, VA
> jalemkul[at]vt.edu | (540) 231-9080
> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
>
> ========================================
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--
Yanmei Song
Department of Chemical Engineering
ASU
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