My apologies in advance, I'm aware that this is probably a stupid question...
If I've run a simulation using the umbrella sampling branch of the pull code (gromacs 3.3.1), in which I restrain a small molecule to a membrane, which options must I include when running g_energy to obtain the energy of the harmonic distance restraint (vs time) from the .edr file?! I've read the manual - and unfortunately, I'm still not understanding it. I guess I've missed something obvious?! :(
Many thanks for your help,
Jen
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