process crashes around 100 steps out of 1000 requested.
On Fri, Apr 10, 2009 at 4:32 PM, Justin A. Lemkul <jalem...@vt.edu> wrote: > > > nam kim wrote: >> >> I have segmentation fault error while running mdrun_mpi( gromacs 4.0.4). >> I have installed gromacs 4.0.4 two month ago and been working fine. >> Today, I just got Segment errors. Rebooting does not much help. >> >> Here is log: >> >> [rd:06790] *** Process received signal *** >> [d:06790] Signal: Segmentation fault (11) >> [rd:06790] Signal code: (128) >> [rd:06790] Failing at address: (nil) >> [rd:06790] [ 0] /lib64/tls/libpthread.so.0 [0x36bc30c430] >> [rd:06790] [ 1] /lib64/ld-linux-x86-64.so.2 [0x36bb607496] >> [rd:06790] [ 2] /lib64/ld-linux-x86-64.so.2 [0x36bb60789e] >> [rd:06790] [ 3] /lib64/ld-linux-x86-64.so.2 [0x36bb60a68a] >> [rd:06790] [ 4] /lib64/ld-linux-x86-64.so.2 [0x36bb60a552] >> [rd:06790] [ 5] >> /usr/local/topspin/lib64/libvapi.so(vipul_cleanup+0x50) [0x2a984472b0] >> [rd:06790] [ 6] /usr/local/topspin/lib64/libvapi.so [0x2a98440c32] >> [rd:06790] *** End of error message *** >> > > Are there any other messages from mdrun? Anything printed to the screen > (LINCS warnings, etc)? > > -Justin > >> >> Thanks >> _______________________________________________ >> gmx-users mailing list gmx-us...@gromacs.org >> http://www.gromacs.org/mailman/listinfo/gmx-users >> Please search the archive at http://www.gromacs.org/search before posting! >> Please don't post (un)subscribe requests to the list. Use the www >> interface or send it to gmx-users-requ...@gromacs.org. >> Can't post? Read http://www.gromacs.org/mailing_lists/users.php >> > > -- > ======================================== > > Justin A. Lemkul > Graduate Research Assistant > ICTAS Doctoral Scholar > Department of Biochemistry > Virginia Tech > Blacksburg, VA > jalemkul[at]vt.edu | (540) 231-9080 > http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin > > ======================================== > _______________________________________________ > gmx-users mailing list gmx-us...@gromacs.org > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the www interface > or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
